PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB12G25330.1
Common NameLOC102713788
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HD-ZIP
Protein Properties Length: 827aa    MW: 90430 Da    PI: 6.1226
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB12G25330.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.87.9e-18560657
                  S--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
      Homeobox  6 tftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                  ++t+eq+e+Le+++ ++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  OB12G25330.1  5 AYTPEQVEALERVYTECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 60
                  68****************************************************97 PP

2START170.98.4e-541503572204
                   HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEE CS
         START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmva 96 
                   +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s+++sg a+ra+g+v  +++  v+e+l+d++ W ++++ ++++ vi +g  g+++l+++
  OB12G25330.1 150 IAEETLAEFMSKATGTAVEWVQMVGMKPGPDSIGIIAVSHNCSGVAARACGLVSLEPT-KVAEILKDRPSWYRDCRCVDIIHVIPTGngGTIELIYM 245
                   68999*****************************************************.8888888888**************************** PP

                   XXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHH CS
         START  97 elqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksgl 189
                   +++a+++l++ Rdf+++Ry+  l++g++vi+++S+++ +  p+   +++++Rae+lpSg+li+p+++g+s + +v+hvdl++++++++lr+l++s  
  OB12G25330.1 246 QTYAPTTLAApRDFWTLRYTSGLEDGSLVICERSLTQSTGGPSgpnTPNFIRAEVLPSGYLIRPCEGGGSMIYIVDHVDLDAWSVPEVLRPLYESPK 342
                   ********999****************************9999999*************************************************** PP

                   HHHHHHHHHHTXXXX CS
         START 190 aegaktwvatlqrqc 204
                   + ++k++ a+l++ +
  OB12G25330.1 343 ILAQKMTIAALRHIR 357
                   **********99865 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.483161IPR001356Homeobox domain
SMARTSM003895.8E-11265IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.1E-18560IPR009057Homeodomain-like
PfamPF000461.9E-15560IPR001356Homeobox domain
SuperFamilySSF466891.07E-15564IPR009057Homeodomain-like
CDDcd000861.45E-15662No hitNo description
CDDcd146867.98E-65493No hitNo description
PROSITE profilePS5084827.005140340IPR002913START domain
CDDcd088752.95E-68144360No hitNo description
Gene3DG3DSA:3.30.530.204.2E-24148340IPR023393START-like domain
SMARTSM002346.6E-45149359IPR002913START domain
PfamPF018521.1E-51150357IPR002913START domain
SuperFamilySSF559611.92E-38150360No hitNo description
SuperFamilySSF559614.12E-5397481No hitNo description
SuperFamilySSF559614.12E-5511584No hitNo description
SuperFamilySSF559614.12E-5620629No hitNo description
PfamPF086701.6E-46684826IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 827 aa     Download sequence    Send to blast
MAAAAYTPEQ VEALERVYTE CPKPSSLRRQ QLIRECPILS NIEPKQIKVW FQNRRCREKQ  60
RKEASRLQTV NRKLNAMNKL LMEENDRLQK QVSRLVYENG YMRTQLHNPS AATTDTSCES  120
VVTSSQHQQQ NPAVLHPQRD ANNPAGLLAI AEETLAEFMS KATGTAVEWV QMVGMKPGPD  180
SIGIIAVSHN CSGVAARACG LVSLEPTKVA EILKDRPSWY RDCRCVDIIH VIPTGNGGTI  240
ELIYMQTYAP TTLAAPRDFW TLRYTSGLED GSLVICERSL TQSTGGPSGP NTPNFIRAEV  300
LPSGYLIRPC EGGGSMIYIV DHVDLDAWSV PEVLRPLYES PKILAQKMTI AALRHIRQIA  360
HESSGEIPYG AGRQPAVFRT FSQRLSRGFN DAVSGFPDDG WSLLSSDGSE DITISVNSSP  420
NKLVGSHVSP NPLFSTVGGG ILCAKASMLL QNVPPALLVR FLREHRSEWA DPGVDAYSAA  480
SLRASPYTVP GLRTSGFMGS QVILPLAHTL EHEEFLEVIR LEGHGFSHDE VLLSRDMYLL  540
QLCSGVDENA TSASAQLVFA PIDESFADDA PLLPSGFRVI PLDTKMDVPS ATRTLDLASA  600
LEVGPGGASR ASTDASGVCN RSVLTIAFQF SYENHLRDSV AAMARNYVRA VMASVQRVAV  660
AIAPSRLGPQ IGMKHPPASP EALTLASWIG RSYRVHTGAD IRWSDTEDAD SPLALLWKHN  720
DAILCCSLKP APMFTFANNA GLDILETTLV NLQDISLEMI LDDEGRKALC SEFPKIMQQG  780
FTYLPGGVCK SSMGRQASYE QAVAWKVLSD DDAPHCLAFM LVNWTFM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU3687120.0EU368712.1 Oryza sativa Indica Group SKIP interacting protein 22 (SIP22) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006664738.10.0PREDICTED: homeobox-leucine zipper protein HOX33
SwissprotA2ZMN90.0HOX33_ORYSI; Homeobox-leucine zipper protein HOX33
SwissprotQ2QM960.0HOX33_ORYSJ; Homeobox-leucine zipper protein HOX33
TrEMBLJ3NEX50.0J3NEX5_ORYBR; Uncharacterized protein
STRINGOB12G25330.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37438197
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34710.10.0HD-ZIP family protein